PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_017057-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family AP2
Protein Properties Length: 581aa    MW: 63248.9 Da    PI: 6.4339
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_017057-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP232.22.6e-10195251155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV++++++gr++A+++d  +     ++ k  + g ++ +++Aa+a++ a+ k++g
  AHYPO_017057-RA 195 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEDKAARAYDLAAIKYWG 251
                      57*******************5444.2455535555.7799999*************98 PP

2AP247.83.6e-15294345155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV+++++ grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  AHYPO_017057-RA 294 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTEEEAAEAYDIAAIKFRG 345
                      57****************988532...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.41E-19195261No hitNo description
SuperFamilySSF541713.53E-14195261IPR016177DNA-binding domain
PfamPF008476.9E-8195251IPR001471AP2/ERF domain
PROSITE profilePS5103217.016196259IPR001471AP2/ERF domain
SMARTSM003801.5E-22196265IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-11196260IPR001471AP2/ERF domain
PRINTSPR003674.0E-6197208IPR001471AP2/ERF domain
SuperFamilySSF541716.02E-18294354IPR016177DNA-binding domain
CDDcd000183.43E-25294353No hitNo description
PfamPF008477.7E-10294345IPR001471AP2/ERF domain
SMARTSM003803.5E-33295359IPR001471AP2/ERF domain
PROSITE profilePS5103219.216295353IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.1E-18295353IPR001471AP2/ERF domain
PRINTSPR003674.0E-6335355IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000723Biological Processtelomere maintenance
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0010073Biological Processmeristem maintenance
GO:0010449Biological Processroot meristem growth
GO:0019827Biological Processstem cell population maintenance
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 581 aa     Download sequence    Send to blast
MGSMNTNNWL SFPLSPTHPS LESHLQSNDS QPHQQFSLGL VSDHIDNPFA QAQGGNEVPK  60
IADFLGVGKS ESHDSPDDLT VFNDIGQGND SDYLFSGNNG LLAMQNSVAA ASNGTQYDQY  120
QDNSNNCLQS LTLSMGSGGQ QHQPISTTNN CDNSGDNNST ASGSTSTAAT VTTAITPVVE  180
PTPRRTLDTF GQRTSIYRGV TRHRWTGRYE AHLWDNSCRR EGQSRKGRQG GYDKEDKAAR  240
AYDLAAIKYW GTSTTTNFPI SNYEKEIEDM KHMTRQEFVA SIRRKSSGFS RGASIYRGVT  300
RHHQHGRWQA RIGRVAGNKD LYLGTFSTEE EAAEAYDIAA IKFRGLNAVT NFDMNRYDVK  360
AILESNTLPI GGGAAKRLKE AQAIESSRKR EEMLALSNSS YPYGATSSTA SRYGAHHQAS  420
HAYPLLPYHH QDHQQQPLLT LQNNHGQDHS NISLSQYSQE AQFLRLYQQS SYSNPSSMYN  480
NYLQTNPSLL HGFMSMGGSN SDGVIDTNNG GYLGGGVGLL GMGSTSTTSN VVGSGDPEPH  540
TMVKVDYDMP SGGGGGGSYD GWSTETVQGP NNGIFTMWND *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010673600.10.0PREDICTED: AP2-like ethylene-responsive transcription factor PLT2
SwissprotQ5YGP70.0PLET2_ARATH; AP2-like ethylene-responsive transcription factor PLT2
TrEMBLA0A0J8CR150.0A0A0J8CR15_BETVU; Uncharacterized protein
STRINGPOPTR_0003s20470.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51190.10.0AP2 family protein